NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208620_1011564

Scaffold Ga0208620_1011564


Overview

Basic Information
Taxon OID3300025368 Open in IMG/M
Scaffold IDGa0208620_1011564 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1065
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013610Metagenome / Metatranscriptome269N
F025270Metagenome / Metatranscriptome202N
F083683Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0208620_10115641F083683N/ADIVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKNHNGN
Ga0208620_10115642F013610N/AMETSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGVERSDLLFRAVHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCETNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0208620_10115643F025270N/AMNQETLENGNTLRSLRVSQAKKVSKYKLKRQWQKIAAEALAMLNDIKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYN
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