Scaffold Ga0208108_1001129

Overview

Basic Information

• Taxon OID: 3300025367
• Scaffold ID: Ga0208108_1001129
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE22May08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3282
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032529	Metagenome / Metatranscriptome	179	N
F036545	Metagenome / Metatranscriptome	169	N
F059665	Metagenome / Metatranscriptome	133	N
F061798	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208108_10011292	F059665	N/A	MSEEKENSKPRFSVRNRIRPSRGRWSDNDLLLFVQSLLNSVNTEENFQVNLNVMEELFEAIKDFRERRPNWYFILEKIPASRREDIGNNKPK
Ga0208108_10011295	F032529	N/A	MAESRRLIDVTDAERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKESTSLKETSSEDTSCEVTSSTDTTSENEAKK
Ga0208108_10011296	F061798	N/A	MAEGRFIDLKSQDIKQIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSENGNPSEGKTNL
Ga0208108_10011298	F036545	GAG	MTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCELCYQVRYPMKKDDLEEIKSLTIS