NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208412_1029625

Scaffold Ga0208412_1029625


Overview

Basic Information
Taxon OID3300025361 Open in IMG/M
Scaffold IDGa0208412_1029625 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF4 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)674
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameDeep Lake, Antarctica
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027372Metagenome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0208412_10296251F027372N/ASSGYSPCGPAGIVVNDCNIVCGNCATDEELADNNNDTIFGNSEWDYPAPVCEDCQKPLNVNLLVYKSHDPELLFRLRMTEELGGFADTDCLTIEEIGAKAAERAGEIGREYAPTDMFESDEHYEIPTDSAQYVNDIAPQLRQLSGYEDGTGKGTYNITPTDIVYDIHKEDVLPAFREAYYNREI

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