Scaffold Ga0209739_123662

Overview

Basic Information

• Taxon OID: 3300025360
• Scaffold ID: Ga0209739_123662
• Source Dataset Name: Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 842
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076263	Metagenome / Metatranscriptome	118	Y
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209739_1236621	F076263	N/A	AILGDLEDLCARLPEGVTFHPTLEIHRHFANEEATYIKFDCRNHRYILTIIRQGIAKTTRVSSREELFRRIFPEYMPGYTGSYTEEFWGEE
Ga0209739_1236622	F081547	N/A	MPYLRGVFINFGEETYYLSCGIVKGGNLDPETYTISDPELMMVRLGRDLYIVTSKLKLFIPVEPIRVLLNSETSKVYNEAIMQGNEVKPT
Ga0209739_1236623	F087442	GAGG	MMREGLVKAGNLVIDCKPCYIAGTGFTKDDVYVVSEGTVVFKWYDKIAVITVGEEGTKLNLLDIIDVRFLVERNENCMVTKL