Scaffold Ga0209739_112523

Overview

Basic Information

• Taxon OID: 3300025360
• Scaffold ID: Ga0209739_112523
• Source Dataset Name: Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Joseph's Coat, Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080245	Metagenome	115	N
F081547	Metagenome / Metatranscriptome	114	Y
F087442	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209739_1125232	F081547	AGGAG	MPYLRGVFINFGEETYYLSCGIVKGGSLDAETYTISQPELMMVRLGRDLYIVTSELKLLIPVEPIKVLLSSETSKVYNEALSQGNEVRPA
Ga0209739_1125233	F087442	GAGG	MMREGLVKAGNLVIDCKPCYVAGTGFTKDDIYVVSEGTVVFKWYDKIAVITVGEEGTKLNLLDIIDVRFLVERNENCMVTKL
Ga0209739_1125234	F080245	N/A	VIFVWSARVTIPGFREEIFVSPALINMYAEITEGVYEVGMFMVPHRGHSLLFLPTMVIKVDEELLKNLEQTSIEDLNTPLNTIDHVFT