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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025360 Open in IMG/M |
| Scaffold ID | Ga0209739_101649 Open in IMG/M |
| Source Dataset Name | Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6819 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (13.33%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → Candidatus Nanoarchaeia → Nanoarchaeales → Nanopusillaceae → Candidatus Nanobsidianus → Candidatus Nanobsidianus stetteri | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Joseph's Coat, Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.376 | Long. (o) | -110.69 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F090626 | Metagenome / Metatranscriptome | 108 | Y |
| F097670 | Metagenome / Metatranscriptome | 104 | Y |
| F099549 | Metagenome / Metatranscriptome | 103 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209739_10164911 | F099549 | N/A | MDENFQYPYVIPDLKTRFQIGFGNIIEQIASLLAYSEMYGDTETFDNEELKYKLRAAIAYALALLGSTWGYAMSAQTQRDVEMAKESLKALFSRIIKDPELTYLDLLDIYYELIQKVSIILNYGTPIPRPRTENYDIT |
| Ga0209739_1016492 | F090626 | N/A | MPRIFKFENIYFGRNSLVKLFANKIHLENYVDYDSTVLAYLLDVSDFTNTNALLSHFAIINGNEIRPILVEWNLRTIYGRLGILLNQLPGPRNTKILLKKFEQIIENNGRPEVVKYTAGQYAKVLANSKGLYQIYNFLVQRIYTLKSIGIKKSLEEVRRLAAIYR |
| Ga0209739_1016497 | F097670 | N/A | MNYKVFDKEIYFETNHLITISLKTNEINHELKLYFYDGKELNELKDIHEYNLKQYEIAQKVQEEFAKFSSKHAKPPIGYITIGNMIFEYMLNRNNVIPIAYADISKVEDEISKEVTNDTIKITYKSKLIFNKEWNFESIQNLPNDIKDNVTKLIEKALKSAITILKKNI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |