Scaffold Ga0209739

Basic Information
Taxon OID	3300025360 Open in IMG/M
Scaffold ID	Ga0209739_100507 Open in IMG/M
Source Dataset Name	Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025360 Open in IMG/M

Scaffold ID

Ga0209739_100507 Open in IMG/M

Source Dataset Name

Hot spring sediment microbial communities from Joseph's Coat, Yellowstone National Park, USA - JC3_ASED (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15762
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (16.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

15762

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (16.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified archaeal viruses → Nanoarchaeotal virus 1

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Joseph's Coat, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Joseph's Coat, Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F062912	Metagenome / Metatranscriptome	130	Y
F077497	Metagenome / Metatranscriptome	117	Y
F090626	Metagenome / Metatranscriptome	108	Y
F097670	Metagenome / Metatranscriptome	104	Y
F099549	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209739_10050710	F097670	N/A	MTSYKIFDKEIFFETDHIIIIDSKTNEIKHEEKHYFYDGKELKEIKDLYEYNLKVYEISQKIQEEFTKFSSKHAKPPIGYVTISNMIFEYMLARNNVILIAYANINKLEKEISKEITDDTIKIIFKSKTIINKEWNFESIQNLPNDIKDNVTKLIEKALKSAMVMLKKNT
Ga0209739_10050714	F099549	N/A	MDTNLQYSYQIPDLKTRFQIGFGNIIEQIIELLTYSGISTDTKTFDDEELKYKLRAAIAYALALLGSTWGYSISAKTQMEVQIAKESLKALFDRIVTDPEITYPELLDIYYELIQKVSIILNYGTPIPQPKTGTYDIT
Ga0209739_10050720	F077497	N/A	MDKEAINKIEEILEKHLFMETNNPDYELKKIDVIIKYLIYQKLKDIDETLKSIDENLFISANKGIYEE
Ga0209739_10050722	F062912	N/A	MDPLEVLEKAYNLFLASEIIESESSIDKELEQLLLNRDYEKMAKTLLYILVYTLNRDPAYKNIRNIYISEAIDLLYVIDRIGFNDERIIKRFVHLLYRFYSYSLEYKIKFITDNGKRELIKAKLNELVNII
Ga0209739_1005074	F090626	N/A	MPRIFRFRNIYFGSDSLVKLFANKTHLENYVDYDATTLAFLLDVSDFTNTNALLSHFAIINGNEIKPILVEWNLKTIYGRLGILLNQLRGPHDTKILLKRFETIIKENGRPEVIKYAAGQFARALVNAKGLYPIYSFLVQRIYLLKLNGIKRSLEEVKRLDAIYK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209739_100507

Overview

Ecosystem & Geography

Associated Families

Sequences