NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208504_1016595

Scaffold Ga0208504_1016595


Overview

Basic Information
Taxon OID3300025358 Open in IMG/M
Scaffold IDGa0208504_1016595 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1018
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034429Metagenome174Y
F042705Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0208504_10165952F042705GGAMADSGKSVTRIGGNTGQMDDMGESVMRIGGNTGQMADSGKSVIRIGGNTGQMADMGKSIIRIGGNTGQMADSGKSVIRIGGNTGQMDDIDESVIRIGGNTGQMADMGKSVMRTGGNTGQMADMSESVMRIGGNTGQMADSGESVIRIGGNTG
Ga0208504_10165954F034429N/AGGNTGQMADSGKSVIRIGGNTGQMDDIDESVIRIGGNTGQMADMGKSVMRTGGNTGQMADMSESVMRIGGNTGQMADSGESVIRIGGNTG

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