Scaffold Ga0208504_1001208

Overview

Basic Information

• Taxon OID: 3300025358
• Scaffold ID: Ga0208504_1001208
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5420
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208504_100120813	F019092	AGGAG	MSNVPILGEKKMDNEPMFRLLFCLVCQTLEELPPYDGEPELDHLLAIACEQHVFPSGEPHKGKLFVLPLRAWAKPESKKEIIRQIKGGGSAGLDELDDKFYESRSTFMEDAMTCYVSHNKPKDGCDDWQHKSKLLIPNTVKERKAEGMARYQDEAGPKTYLCNFCPVSIAVNQRKQKLLG
Ga0208504_10012087	F025484	GGAGG	MDDGSGGLILDLQARQIAENAIRYNGSAPCPTCGVIMNPVEFMNNRGHCLSCLTQKKMSRMKGKMA
Ga0208504_10012088	F005167	AGGA	MAVNSSRSMNKSLDEGTTDGKYRKARPDTELIPGLGDEATINNRQSLHPFYGYGFLTSEYPNKVNPGK