NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208504_1000160

Scaffold Ga0208504_1000160


Overview

Basic Information
Taxon OID3300025358 Open in IMG/M
Scaffold IDGa0208504_1000160 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17753
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (25.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039455Metagenome163Y
F091224Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208504_10001603F039455GAGMASVHVNAGRYGDIIAFLPVLYSEYQETGIKPRLVVAKEYADLLDGVSYVDPLVFDGAFEDVAGAIQFAKQFGDTVKTSQVVGISDVIVSQVYGNSHAPKIVCDSFQKDAWKLAGKLDLWPNQPPLIFDNRNRKREAKLTKGIPMDKPWLVVSTGGFSSPFPYNDLLWEILNHSLPEFHIIDLSKIKAERFYDLLGIMDHPNTDAMILTDSGPLHLAYASKKPVHALVTDTPTMWHGAAWRPCFASYTRYKNFPRDVTRILNLIRNPVPKPKYPSIIHVYQRTPWATGEEKRRNDVASKTWDAIGCFDLGLDDNCFVRHSGNVIPNEKKNIPMIKDMLRMACIGRDDKDVIILTNTDTCVASNLIERLAGELPAYSYRYDFKRIDDPIPDGEICLGKKYAGCDLFVMRVGWWRRNHALFPDMVLGREAWDKILRELIKLSGGRELESCIYHEKHPSFWENAHNINRDPCNLRNRLLARNWLVERNMPLEELEFTNYEGKFVKPNFKKVKL
Ga0208504_10001609F091224N/AMKSRIDDILNQLGFETPELEPINKREALDRGLIKGREKPKQCACGKSAYSSESKCDAAIKHRLKSGFGGTGFLRAYECDIVPGNWHMSSSHTKNNK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.