Scaffold Ga0208504_1000128

Overview

Basic Information

• Taxon OID: 3300025358
• Scaffold ID: Ga0208504_1000128
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19813
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (65.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010592	Metagenome	301	Y
F054520	Metagenome	139	N
F069612	Metagenome	123	N
F070807	Metagenome	122	N
F078045	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208504_100012811	F010592	N/A	MSTYKPFSQDLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGFPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF
Ga0208504_100012812	F078045	GGAG	MSYEHFVNNYQRWLKSPRTLSEAFKDAEYATSITRPEDGEYSLFWGLLGALMFVAIFGYGFWRYVNL
Ga0208504_100012817	F069612	N/A	MMGACKLNPVVVNKMPQDWCGQEIPKEYEEPGITITVAPKATTVAQETTYDIHTDEVKPKRGRKNAGTKE
Ga0208504_100012824	F070807	N/A	MEILIKKIKENKDGSAEVHVHYDKEGLHFLVQQGMTCTLVEAIMMERNGKMFHVSSVLDTTPKKTVVKKQQTKKK
Ga0208504_100012830	F054520	AGGGGG	MLEKTIIAATGMGYLMVGVMQLRKGAFPNAIIWLGYAFSQIGLWLALK