NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208504_1000108

Scaffold Ga0208504_1000108


Overview

Basic Information
Taxon OID3300025358 Open in IMG/M
Scaffold IDGa0208504_1000108 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21342
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (83.78%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006660Metagenome367Y
F055534Metagenome138Y
F066311Metagenome126N
F081067Metagenome / Metatranscriptome114Y
F087091Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208504_100010812F081067AGAAGMTRFTEKYVRSDNQWVKITRDNVQRTFTFARGYKNEFKAHEISTLSFKWVSNWTEALEKANKTIATFA
Ga0208504_100010817F055534GGAMREHYNDEEREAARILDLVRMGDKNIPRSVINWALWCLGDAVGQ
Ga0208504_100010819F087091AGGAMILSNSYPTEVYVSDMGYFVIKQDCFECGHQTQFLFTPDQTKLLFNLLPDFLKEQQEKWTGLHSPHESTNDE
Ga0208504_100010825F066311GGGGGMTWILTFFSDLFYILAMLALVGGIALYGVSYVAKWLPVIATYALMMQVGGIVLALGGGYFVAEHKGYEKRVAEDKAEIDRLNAEARQKEAELAQTLKEKTAALRKATNAISQKQVVTNQRIDAGELRFPTSCPVQASSDAGTPAGNPENGTEPERQALKDIVTIAAEGDAAIVKLNACIDQYETVKGKVNAQQ
Ga0208504_100010836F006660AGGAMAFQQIFEIQQKMTVNNRRIVGQQVTRAGYMTTAQYLTAVPWQFTVVPHNFLYYPKVRNIIQGIDNLDRQLPETIIFNSSLLSWFTAYQGDLNLSDAQALTLASVPAANSQTITVGNLPSVASTAAVFRAGDFLQLGSYSYKVTADVLRGSGSTVSVNLNRPVIGTVTTGTLTAVANNCTFTVVAEQCPTYTLNPMTNGAFVEWSGPFVFREYVTG
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