NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208504_1000053

Scaffold Ga0208504_1000053


Overview

Basic Information
Taxon OID3300025358 Open in IMG/M
Scaffold IDGa0208504_1000053 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30739
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (66.13%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019426Metagenome229Y
F028070Metagenome / Metatranscriptome192Y
F028168Metagenome192Y
F041564Metagenome / Metatranscriptome159Y
F071905Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208504_100005310F041564GAGGLEYDPTNEEHQELMNYLVSEGAATLDGIADDGEPIYKFDMEILEEVMPELHQAMLDDMDQVLLDLYQKGLIEVSYDEDLNAQIAVSEEGRNALIQAGFDMDAFDEEEF
Ga0208504_10000533F028070N/AMAKKIREVKCPVKNLKLDVRARPNYLALTVYEENVMEYNESQRMQLMEYLLLLRQLIISYGTACEIEGVASNGKQ
Ga0208504_100005338F071905N/AMKLYDSKEWCYKRYVVEKKKIVDMAMEAKCSHMTIQRSLERFGLIKKQRKWAK
Ga0208504_100005342F028168AGGAMTEKPVIELISELTEFNDIKQFMNDPDLDYALDLIIKLIAKPDVPSSKAPDLIVKMQALSAKFAIMSRFYTTFEKGGENSKKKNVYYTAEEAINRLVDALKYSAKYGA
Ga0208504_10000537F019426AGGMRVLIFGDKNWRDYNDLIRQLTVLIDDRKHFYPDDTEYIFVHKGLQGAENMVTEYIGKTERFLRQKGYRIKEELVRDRTSYSDVTMIESMPDFALVFGDCPRNRQCVKLLETYQIPFRYIKE
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