Basic Information | |
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Taxon OID | 3300025358 Open in IMG/M |
Scaffold ID | Ga0208504_1000020 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 44939 |
Total Scaffold Genes | 60 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (73.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009735 | Metagenome / Metatranscriptome | 313 | Y |
F017814 | Metagenome / Metatranscriptome | 238 | Y |
F020318 | Metagenome / Metatranscriptome | 224 | Y |
F062386 | Metagenome / Metatranscriptome | 130 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208504_100002016 | F009735 | AGGAG | VLIGLIWKKSNMTMMTGIVESVSTKDVNTKFGLKPTFSMKVNGTWVKCGFKDPGVSVGNQVEFDGVTGTYGVETKKVIVLSKGTTAPAAASPASTSTPVVGKTFSGGGYKEKVFPIPPLHGDRAIVRQNALARATDIYIAARGGKPFELELSTLDLVIQFARKFEAYTAGDLDLESATNEVANEVESDISTLF |
Ga0208504_100002028 | F017814 | GAGG | MSQSNFDFNQFNIMTERKPAGLQIFLAQQLLSNALWSMEKYDNPHCDALADALNAVKVIRATMKAEAAQRAVGTATL |
Ga0208504_100002034 | F020318 | AGGAG | LEVVTKENFEEWKFHPVTSRLMRLLSEDREAMKEGLVNHSYEDEAEVKGRCRAIAIILNLEYEDLFEAKVAPNEQ |
Ga0208504_100002042 | F062386 | N/A | MHKQLVHEKTGDTITVSIAADGGKNIVLLVTGTIEHEDDSVFDAIDISRLSGSPSNIRLDSTVFMVESGLKVMLSYRNQPYVLPLEGRSKIDLGWVGGLIGHEIDMVFKGTGSFFIVLDISKMGV |
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