Scaffold Ga0208504_1000017

Overview

Basic Information

• Taxon OID: 3300025358
• Scaffold ID: Ga0208504_1000017
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46786
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 60 (75.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007405	Metagenome	351	Y
F024029	Metagenome	207	Y
F093850	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208504_100001738	F093850	N/A	MIEGSLRMESYQDVWKDAIDIEYDGELSPEVCKAIEKAFSSSRFMGKAQSGYGALRWSNGDNIVGVDVAKRQLIVESSVSLCD
Ga0208504_100001741	F024029	AGGAG	MNDEYIWTATGTNIEERWVKKYGWVRPSDLPEYRAKWKYYQELPLRSLDDRAKAEYEMIMKKAKVVRIK
Ga0208504_100001757	F007405	GGA	MVVTISPTHSFTYDGAQLNVYHADKGQGLPKHSHGFSHATMCNSGSCLVSLEGRSYTIDKNSQPLNLPAGEWHEIEALEDNTVFVNVFAEGKY