Basic Information | |
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Taxon OID | 3300025358 Open in IMG/M |
Scaffold ID | Ga0208504_1000004 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 83936 |
Total Scaffold Genes | 109 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 74 (67.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000652 | Metagenome / Metatranscriptome | 959 | Y |
F029334 | Metagenome | 188 | Y |
F029335 | Metagenome / Metatranscriptome | 188 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208504_100000443 | F029334 | AGGAG | MKELETKSAGYFAVAAAIDAQRRNSNNKSSYTQEQIRQAVTARDLLDTAFSYSKLYINYRKKFIAIKAEGARAKDALAREVVKLFESNGYGVVSTPQGMIVRIDK |
Ga0208504_100000444 | F000652 | AGGAG | MKVIVTTTLNQELEVPDNWDRLDVFDFLAECQSFRTAFQGVSNEDQTARIVDLHVVTEEVLELGEEAFDD |
Ga0208504_100000458 | F029335 | AGGAGG | MKTITTLRNGNLYEMSITEAIEIVETYKRVNGHPGVLEAVIEMGDLVALDELPTIQKVAYRRFMKDMQALFAPA |
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