Scaffold Ga0208383_1000218

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1000218
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11222
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (31.82%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010516	Metagenome	302	Y
F021219	Metagenome	219	N
F060487	Metagenome	132	N
F070722	Metagenome	122	N
F071820	Metagenome	121	N
F086514	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_100021813	F010516	AGG	MNSYAVWVPTNTGRYLLTFPSLDEAYLFIIKFGGGLEVVSNTYENF
Ga0208383_100021814	F070722	N/A	MNDDLLKQALAQIGRKGGLSTSDKKRASSRLNAAKATEARLKRQKPVKGHRIAPNEKVE
Ga0208383_100021818	F060487	N/A	MMKNKRTPTKVSQVKELQAQIKHLQMIVASRELDVEILEEQINTMEHNRLLNRVKRFFLRDTKL
Ga0208383_100021819	F071820	N/A	MSQQRSKATSWASLLQNEIKATEKKPVGRGWKTAKELQREFKVGERKLYEILAKLSREKRIERFSGFIINDSGQKATRAWYRVKRSA
Ga0208383_100021821	F086514	AGG	MMINPLNAICVQSGIPNSILQQESIDEPIVAARLHEMDIKEYLREMGRKGGKARAAKLTPEERTRSALYAVSMREYLKELKKKKSS
Ga0208383_100021822	F021219	N/A	MLRDEMKTDPTLDVTPVNVTIGSTWVDACATPFNKSVIEIVNRKGNYVQFKYTILNNRPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVAEQEIEE