Scaffold Ga0208383_1000194

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1000194
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11931
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (75.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010521	Metagenome	302	Y
F010592	Metagenome	301	Y
F046794	Metagenome	150	N
F074308	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_10001941	F010592	AGG	MVSGDMSAYKPFNQYLHDVYDAPARKAVASWCNMKWGFDCRDNPNKYGVDLIAFRSDVPVGALEVEVRQAGFDRHGSIHIGQRKDKLFLNNLPTLFFALTHDLSHAYWVKADLIKGCPLIEVKNFYVPNGELFYDCPISMFK
Ga0208383_100019419	F010521	AGG	MKLTPAIVRNLYSAIYCMKPFDRWNMPLPEEIQFIVDKDPAVMGSYLYDTGEDYEHTVTISAARCGHLDTVIRVLCHECIHISRHKTNKWTHHDKEFRNRAHRISSELGFDPLEL
Ga0208383_100019422	F074308	AGGA	MGKMDSMKGAKGATGEKLPKGATSSDMSGERKQKLVGGVAMGKMDAMGSRPLSHAGNFEGKLGELNDGNMGEREVYSHVRTAHAQDGC
Ga0208383_10001947	F046794	AGG	MTCKACKFFVFNQNDMMGACKLNPIVVNKLPQDWCGQEIPAEYEATVIPDAPVIEVVYDINTDEVKPKRGRKSANKGQQ