Scaffold Ga0208383_1000121

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1000121
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15110
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (8.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021232	Metagenome	219	N
F046110	Metagenome	151	N
F048063	Metagenome	148	N
F055384	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_100012112	F055384	N/A	MITKPTNTFLAAEFPTWIDLKVGTVMEVRKEGQTGYLVDHPIIEGDCVVQKCNCIEVRDEVECCVTI
Ga0208383_100012113	F021232	N/A	MKMKQLKQTYIIFTASDTVYCTAESYDLANEIIEADGLVDAVVQQVNHITNIKEGIPVTISYENTSTYDCTSDDVNDVRHKDHY
Ga0208383_100012114	F046110	N/A	MTNRFDESLMHLHDQLSSITNHNVPVTLVNTIEQQVLLIQARQAYVTGHKQSYELILRELMEHIQLKLTGKN
Ga0208383_100012117	F048063	N/A	MLILKCNVTGKEVKWTNKAIIDAKIKQYGSLEAFKAAYVSKGANKKAKVKSTLLKSNEVNLMKSICEEGIKLSPQSIDKSLSTKHMSNEEYVKHYEAKVKALEEAGASAAEIGWMKQRLERWRGVAA