Scaffold Ga0208383_1000040

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1000040
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31738
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (19.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F089761	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_100004010	F048735	N/A	MEYKGLVLDPPADTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERIKMDLKLENTTLKNPAQHMINCFQLIYGNDVLLHSQGIPNNYALDIINLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKFGKDTSIGNLVEYRRMIVFESIDTKDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWESVNRYTHQWKTRTGVALHLSGEDSPNFLKPDAEIPPFDRFLTVEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPVWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYSSSVGDVFEESIAMQLVKDCIKYGVHPRDFGLDISGDGGKMMRAIIIEWSKFHPEAMFVFPISSMAMPTERKISNLDKRTCKEAYDRLVTEYWFAVHTAMSTKSLVGIDVEKHTQMVNELCSRLYYHKGRKVAVEKKLDMKARIKKSPDLADSMTYAVQMLRRAGLEFNFEEEAESLDILEIQDWENRLVHSKHNSEEQIENDEWGYGGRGCDDDGF
Ga0208383_100004019	F089761	N/A	MSLRYPESEFTRPSIMLLRSLATELGEKASKDPGGYGGMKQERKRLTAILKDHIDDPRLSDWDRDMIRGLE
Ga0208383_10000405	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVAPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNANDVSTWPRLVRVLPYIPVTTELGCKYVQNPAFANADFGITNPWVNKAMIKWISPSQSGLGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLIIPAACTLAPNYTPQYTPDCYVCSDVITEPI
Ga0208383_100004059	F039455	GAG	MASVHVNCGRYGDIISFIPVLHNEYQETGIKPRLVVAKDYADILDGVSYVDPLVFDGAFEDVAGAIQFAKQHGDNVTTSQVVGISDVIVSQVYGNSHAPKIVCDSFQKDAWKLADKLELWPSQPPLVFDRRDKKREAKLIKDIPKGKPWIVVSTGGTSSPFPWNDLLWEIIRHSLSNFHVVDLANIKAERFYDLLGIMDHPNTAAMILTDSGPLHLSYATKKPVHALVVDSPNMWYGSAWRPSYASYTRYKNFPRDVTRILDLIRNPPEKPKHSDIVHVYSRLPNATGEEKRRNDLAASTWNVGWVDCGLDDNCFVRHSANTIPNQKKDIPMIKEMIKFSCCGRKDTDIVVITNTDICVTTDIIEKIRKAPLGYAFRHDYKYLDKVIPDDEIAGSKYPGCDLFTIPVGWWRKNHHLYPDMVIGRHSWDRIMRELIKLAKGQEIEKAIYHQRHDSLWERTEHINSDLCNLRNAKLAREWLLQRKMPLEELEFLNYEGKFKKPVKKR
Ga0208383_10000409	F030662	N/A	MKLKNPNEAIPGGLWYQYSDDKGNTYRVNGMDLTFGRQFIQKIKSDMTNKNVAIPDNLDYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPSCQRRREALNKAIG