Scaffold Ga0208383_1000027

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1000027
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36473
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (78.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015431	Metagenome	254	Y
F034803	Metagenome	173	Y
F054028	Metagenome	140	Y
F066380	Metagenome	126	N
F094772	Metagenome	105	N
F102001	Metagenome	102	N
F102392	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_100002712	F015431	AGG	MAVGRKEARDTIATFIKPPQVDGINQVFTSFPKRINFEVNALPSQRNRCAAVVFIESETETRIGLGGYTAAGVATGIKKVDYSVAIQLFHHSLENNAEDAMADFDNVIDNLKNRLRSDHQFGDKSGVLVWQAAEPVINTSYGEPMSSNGTATETWAVVRFDVTQVINA
Ga0208383_100002721	F102001	AGAAGG	MELPIDGVLKEMRDIIGVQAQEIALLKATLTALQNPPAPTYTTAVTDKPDVIGTQGIKP
Ga0208383_100002736	F094772	GGAG	MITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASAHYEVAMAKARMKNSHTDLKMTATMREDQALIENETMHLRLAIAEASVKACRANVNRIRTQVDITRSISSSIKATLEL
Ga0208383_100002739	F066380	GGA	MKTILQEAETAFITVHESFCLEKDLKKCHLNHYDLIKRLQDYEKGIEARIRSEIAGDLEQARDFLVLTKDPEEGTAAMWIKFAFDKAVGFLKEEK
Ga0208383_100002743	F054028	GGAGG	MMKLVPTNEKITIKWFAVLSDGSKMRNNKGFIHNAWDVECSCGWESRTGGAIKAAVVKDVDKHKLFVHNYEFVVA
Ga0208383_100002748	F102392	AGG	MKVICKENHWKINGAKLVLDTPEGQEAVEQMVKAIQARVRLAIYEEICALDLTTRRKQIVKNGLENSLLQVQDLCAQIALGQK
Ga0208383_100002765	F034803	GGAG	MPSQAISQTPDPLNITVRQNQEWAITFSYTDSTGTLISLAGYTPILQFRTSALAKTTALSLTVGNGITFNPNSLPQVQVDTTINCAPGKYEWDLKLTPSSGASIFLGVGTVQVNAEVSR