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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025357 Open in IMG/M |
| Scaffold ID | Ga0208383_1000004 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 122736 |
| Total Scaffold Genes | 144 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 24 (16.67%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Crystal Bog, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029343 | Metagenome | 188 | Y |
| F066397 | Metagenome | 126 | Y |
| F070811 | Metagenome | 122 | Y |
| F093285 | Metagenome | 106 | Y |
| F102502 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208383_1000004111 | F066397 | N/A | MNKSTSIDINYLSYACDLQGNCAWSLKAGSPDIKQVPTPTDNSTAFLPDNPTQYASILKLADRANITLNDLVVAQGSECTVDVNNNVTATVTGTFGNPTPNIGNQVFSVKGNCNVTINGTLKGAGNRMNADILVDNWSDQDYSGSTVDLTNAKHETGRKLNVVYRIGSSKIKGDCNKLLLPSIGLTAYYYLKLLVRKVMRIKQGQKGPSFL |
| Ga0208383_1000004113 | F093285 | N/A | MKFQELMESYGMIRQEKRIFYPRDFNLSKKFLSVLKEELILQEKAGIAPDKFLHKLNRAMQFHISEHKKNLSQK |
| Ga0208383_100000434 | F102502 | N/A | MKKTIQHKIERDIKQSGLSYAEQNKALEANEQVETDNTKGMVRLEEYANSDLNLKSWKLTAVLDDILFCQFADTNEDGTMIRRGDIWIPINAVNQAWRVAKVILSGPRAKVKPGQHVIFPSTFGLKASNVNNLKNIVFLNEDRIFGVAEPEETYDKYVK |
| Ga0208383_100000473 | F070811 | N/A | MTTLEAITNSVYANYPHLLADNVSIVDYCFWDCLSNTEIPVKEMKEVKNYLTSNGIVDFTLVIFFSDNTIGYRLKI |
| Ga0208383_100000495 | F029343 | N/A | METINTITNNKLSLYEFARWAALLEAVNIIADKCEDRGIDFDSPGGIKYIKPLDIQDYVNIRTDALMIKIKTAREIEKNLNNIKCLQIEKQLKRLEVVE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |