Scaffold Ga0208254

Basic Information
Taxon OID	3300025355 Open in IMG/M
Scaffold ID	Ga0208254_1000676 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025355 Open in IMG/M

Scaffold ID

Ga0208254_1000676 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3297
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3297

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016243	Metagenome / Metatranscriptome	248	N
F022147	Metagenome / Metatranscriptome	215	N
F037570	Metagenome / Metatranscriptome	167	N
F039941	Metagenome / Metatranscriptome	162	N
F073465	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208254_10006762	F039941	N/A	MDIETLALRLEEIKLNRLEVLEEKKVLAEELLDGRLRIELKRSIMENMSLLIQLDLALNEAEILYENLIECRVLHACYRQQSS
Ga0208254_10006763	F037570	AGTAG	MNIKKLDLLKIRNLKFRASQRQIVIDRLLRKQNLEKDLWKVSIKTLIILAKIKFRCEELERISENLEQTVINGY
Ga0208254_10006764	F022147	GAG	MQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRVQKSKDIVTLEKVSIANKLLIKTLSDETRSALKEQLALVSKVGSTFTNLSLMYTYIENNDSGFATRS
Ga0208254_10006765	F016243	N/A	MNEAQITKIVMRLATRSRWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKLQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYKFLIENCENE
Ga0208254_10006769	F073465	N/A	MSNWRYRWRRPRPRYRPAPPAPRIEAVPIRSIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFAELENDSETEPLISDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208254_1000676

Overview

Ecosystem & Geography

Associated Families

Sequences