NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208254_1000653

Scaffold Ga0208254_1000653


Overview

Basic Information
Taxon OID3300025355 Open in IMG/M
Scaffold IDGa0208254_1000653 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3405
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F013610Metagenome / Metatranscriptome269N
F015585Metagenome / Metatranscriptome253N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0208254_10006532F025270N/AMNQETLENGNTLRSLRVRQATKTSKYKLKRQWQKIAAEALAKLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPTNS
Ga0208254_10006533F013610N/AMETSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVIEDKWDCETNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0208254_10006535F008351N/AMNSDQETEPLETCSEELVHTVKESVEKLFSLMNTEFSRSSISNEEEDFSLLKQMCEAKANILKDNPSWSTFDPTTMLAGIAVGRIDWLDIEGPWDGTKNIENYKVIKKHLRELREYNPHWKLDEQDVIKRSTCHNCGTVKSIPEKETPLKEYTGQQKN
Ga0208254_10006539F015585N/ARLRIKYRFVKLKEIRMSQKNTESNQRLIKVINHCSRIAESKEVKELQLSPQLGELIKNLAGKGKEWSFILITYPKKNSEVQGKPPSEVKAEPGLSEEEKFFSSPW
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