Scaffold Ga0207995_101592

Overview

Basic Information

• Taxon OID: 3300025352
• Scaffold ID: Ga0207995_101592
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 022AM (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5360
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanohalophilus → unclassified Methanohalophilus → Methanohalophilus sp. RSK (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5627
  • Long. (^o): 78.1882
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074233	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207995_1015921	F074233	N/A	KIIGIALVAMLAFGGLSGAVSAQEENMGDINVTVEDNGTAVNAQNMTLMNAADDTEVEVLETDSEGIVSFTEISYGEYYLSYNDSEGVTYDSATFETQTEVSLLDWDVDANSLTLEDGSGNLIEEYVGTQDDFVVTDVLSEESNDASTLIGYAGVVAGTVITLIILIISLIITLRIFRNI