NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208135_110904

Scaffold Ga0208135_110904


Overview

Basic Information
Taxon OID3300025351 Open in IMG/M
Scaffold IDGa0208135_110904 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)820
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameDeep Lake, Antarctica
CoordinatesLat. (o)-68.5627Long. (o)78.1882Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037512Metagenome167Y
F050795Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0208135_1109041F037512GGAGMRDYRVVMLSTDPDSACQFVIYPRAATEREAVDQANGQYNPHFEVDRFAVTEIMK
Ga0208135_1109043F050795AGGTGGMKALEIPKRFTGTVYVCILSDPKSCLYGDTFLSQFDPKGSNDSITLGKGEVDIALDCTGTLDKQVDQLRTARQKIIDKASGEARQIEEAIESLLAIEHKKVEL

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