Scaffold Ga0208866_1000401

Overview

Basic Information

• Taxon OID: 3300025340
• Scaffold ID: Ga0208866_1000401
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2797
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031758	Metagenome / Metatranscriptome	181	N
F040464	Metagenome / Metatranscriptome	161	N
F043229	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208866_10004012	F031758	AGAAG	MSANKSQEKELLIKNLFKLINEIFIVKPGVTFDEIILQVRNTKKRILEIDPNWKLGNKYFHYVHKVISLMDEINTLDEINLEKQRKTFRKILKTTKTLRQTDQLWRMNPIIILNFLECNSKIVMSAGQISKKPREQVPLDQVNK
Ga0208866_10004013	F043229	N/A	MTQKGVKLEIETIEECGCEPHECYCRHNKEYKKSMKIRNLTTMIGLIEADAPLSFRALERICELKKKIKRIDPEWILIDEVKLLEHQVLSQLDIIDHTIPWNSARNKLRYIELCQSINKLKIIHPDWEMDLEDSKNHYICRCCSCLEKRKMYQQTLDETRSEKSTPYKGSRNKFSN
Ga0208866_10004015	F040464	N/A	MDKKTRSYKNKVYTFKHRTMNPMVSLEWLRRGYAFVGQTQEHLKDILKELTLKMRTMTDKEIERDLRKGLKVTGDITLELSRFVRQGLEQKRTFKGLLGTLIETKNWALIKLILEVTEELKERNSSSSLLLSIAKEILRELQRIQAIIPIKELKQMETSLIDIQYWKLTRHLRI