Scaffold Ga0208866

Basic Information
Taxon OID	3300025340 Open in IMG/M
Scaffold ID	Ga0208866_1000225 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025340 Open in IMG/M

Scaffold ID

Ga0208866_1000225 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3527
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3527

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013610	Metagenome / Metatranscriptome	269	N
F016925	Metagenome / Metatranscriptome	243	N
F018161	Metagenome / Metatranscriptome	236	N
F025270	Metagenome / Metatranscriptome	202	N
F039492	Metagenome / Metatranscriptome	163	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208866_10002252	F018161	N/A	MSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKR
Ga0208866_10002253	F013610	N/A	METSTNKDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDSMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0208866_10002254	F025270	N/A	MNQETLENGNTLRSLRVRQATKASKYKLKRQWQKIAAEALARLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPTNS
Ga0208866_10002256	F039492	N/A	VTVKKVTEKYTLDEQLPEAKLELGHKANAIRMLSDLDAPLYMHILTLELCKMTQLIRSHVKEQDKESIAHKAYHVIKEIKKKRPKWIFHQNPRAEYNFEKKSLTDGQVYDRELLKIKDCRNTCGIVNKVNVKRSFSQNKHVFEELKQMQSMGQEKTPRWVFAYKIPPLPIIKEIDFNFK
Ga0208866_10002257	F016925	N/A	MKRGVGKAMPTQHIVATNGIIRPVGPTDLRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLIVARNRAIRQLQKNIDDLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208866_1000225

Overview

Ecosystem & Geography

Associated Families

Sequences