Scaffold Ga0208866_1000147

Overview

Basic Information

• Taxon OID: 3300025340
• Scaffold ID: Ga0208866_1000147
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4149
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016494	Metagenome / Metatranscriptome	246	N
F031075	Metagenome / Metatranscriptome	183	N
F085117	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208866_100014710	F016494	N/A	MSQKDNNSEEVTIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFHTLKSRIKKIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNTQLS
Ga0208866_10001473	F085117	N/A	MEQKSTSKKVDKSQEIASCRKSISETTILLREKIQLLTILFDKLTISERNLIGEELMEVFGNSMRMILDISQNLEIPVKTSVAKVLFTD
Ga0208866_10001479	F031075	N/A	MSQEKPTSVSETANRKEKSEDCGHEVNACTCPPDKGYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIRKIDPNWLLADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK