Scaffold Ga0208502

Basic Information
Taxon OID	3300025339 Open in IMG/M
Scaffold ID	Ga0208502_1000357 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025339 Open in IMG/M

Scaffold ID

Ga0208502_1000357 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4470
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (100.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4470

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (100.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F052345	Metagenome	142	Y
F102399	Metagenome	101	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208502_100035710	F052345	AGG	MDRRTREYKELVKMTPTTEDLLTEEIDGELYLYKRSPQCKICNTSDDLRGIVDSLLLFPKSYKEVLRAIEPLQEKLNMPKEERINYENIRNHQKNHLPFEKRMVREVVERRAREKNISILDASQRMLTAEAFYEVILAKGWEELAMGYEKPTLTQTMHAMEMLRAIEKEESSDYRPEDLLQQLDMILLAIRDVLPPDMKQALFKKIEDYQGESGARKKRSRSSQAELESGEEYIDADLEEDF
Ga0208502_10003575	F102399	AGG	MTFLERTLASYQRNEIITPYIEEALIHADWPEEYPIRVYNKERKFDNMYHPSTDITKGEMHLYYKFHPELRAFYKEERISPTLQMTFQIGSALHSMMQSMLIHLGFTSEDSVEVRIRDEERMIAGAIDILELTMPNGERFLVDIKTCNKLPLEASHTYSMQLRVYQDVHPDAPERMALLFVEKSYPHRLRAIEVQPDPDELNKLYDKWSRVRVAIRNNDPSELKSCCNGPTTEEFTVCPAKSICERWSENDNTTKG
Ga0208502_10003577	F021233	AGGAG	VSNNFKRGLAPLETAPEPELGSNHDDRFSEMHEFAVRAFTWKTKQEDLSLLDSIEQVVDQFMADYMRPAEVIIARFNTDKSMTVDEQDRLFLNLQSAITAIEEEVTRRYLKAQYAWYMLDDKYWTAWRKPSSGTQKDLEAVAKIETQSDRQFYFVQYAAWRMINDKVQSMKASQRYIQNQLYRRG
Ga0208502_10003578	F027396	GAGG	MEEPAPKPRKSRKQEVIQGQMTWQILERLLNNYMEWQQVYLKTGNPDLHLLNGVTVNIYDLMKGIESLPPRQKQAVVLSCLENRKEVEVARIMGFQKWSSQVGMYKRKALKNLCETVWKNYEES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208502_1000357

Overview

Ecosystem & Geography

Associated Families

Sequences