Scaffold Ga0208252

Basic Information
Taxon OID	3300025337 Open in IMG/M
Scaffold ID	Ga0208252_100413 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025337 Open in IMG/M

Scaffold ID

Ga0208252_100413 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jun07 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5583
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (26.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5583

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (26.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046332	Metagenome / Metatranscriptome	151	N
F048095	Metagenome / Metatranscriptome	148	N
F051885	Metagenome / Metatranscriptome	143	N
F066725	Metagenome / Metatranscriptome	126	N
F091313	Metagenome / Metatranscriptome	107	N
F091933	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208252_10041310	F091933	N/A	MERNNRRRITFENFKGGLKIVLAYTDIAIETLRFNLAGGDGYFFNNKNWLNLVQQAKDTYGQILDCYLNESSSRGPFECEVVMVPLLRNLSELERIIQLGNNEMALTTLTAYSNHLAQLIQVPYESWTATFLNTHIFCKQDATYTVFVNTKCQQTLI
Ga0208252_10041311	F048095	N/A	MSQSDTQKSFQDGLNAVQDLTIRSILANSQESRNRGNLYHTSTDYYKQAIRHAKNTCRDILRTVTIDSDIAILTLIYEANIATLENILEASDFELKSKSLKLFYDYLERIKATEFREWKDQMIYLPIGPISASPLWNGIIAEE
Ga0208252_1004132	F051885	N/A	MSSGSKVEAPNTSSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVEDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKSYSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0208252_1004136	F066725	GAG	VKKPNSFAKMCTRGVTWFTNPEGGEFTPAQLWDLREDLTKHLIIVLGRLTVELGSRFESPATLPHYMHLMHDTILKLKSIDSNWHLVYSAEKENCLRIMQHDCRCGFKNRRRKQL
Ga0208252_1004137	F046332	N/A	MNQSAQVSSSGHNRHTSMVSQGPLINGWCHERDQLVRRLIKLVNDVFVDDHYPGDNLVWVKPMRDIAEAIVRLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
Ga0208252_1004138	F091313	GAG	MATQSNDNSSTPQYRLIDGRYKIVPQFIQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEEPRDFVHEMKDVLHQIHLYDDDWELKVRTSNDGHLIFRHYNCKCDDIIQHESVSSSQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208252_100413

Overview

Ecosystem & Geography

Associated Families

Sequences