Scaffold Ga0209342_10221300

Overview

Basic Information

• Taxon OID: 3300025326
• Scaffold ID: Ga0209342_10221300
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1677
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004117	Metagenome / Metatranscriptome	452	Y
F004347	Metagenome / Metatranscriptome	442	Y
F074645	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209342_102213001	F074645	GGAGG	MARGPSVEFGDVFVVRETETALLCRIGDKFHWVAHSRLQPGSTVVHPGDLGVLVLAWDFAVEFWDGAMSDQRRRPLCDGVRLGGLPCRVARLPGSRFCFSHDPTTAREREAAQALGPASSTVRDAFPSTS
Ga0209342_102213002	F004117	N/A	MHFPRHRRHGRADGTLLPLTTTCCISRVAGAFLLFVLLTSPRGSASDPGAAAVDHGPGPASGALTVSVSETPDAVLLHIRASGDVEPGSVEVRFAGRKAVVLARDAEGRAIRSQPLRLPEPVVEEGSSADYYADGALVVTLRKQATAQDTGPTGDPEAPAR
Ga0209342_102213003	F004347	AGG	VQPETARWLNESRGSFGAAQSRFNDTSSMDVTGAAALFRSAEYAMKAVIVEHYGFLPSSFKTHHRIVNLSHLIGLWSQLPPDLRAHLADLAPLDPNVLYPRETRPRDPPRTYETLVSSSSNAEWQQRLTTAPRFIQYIEHDVIGNPAAFGKLTF