Scaffold Ga0209641_10071687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209641_10071687

Scaffold Ga0209641_10071687

Overview

Basic Information
Taxon OID	3300025322 Open in IMG/M
Scaffold ID	Ga0209641_10071687 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2661
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.534762	Long. (^o)	-107.782602	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003152	Metagenome / Metatranscriptome	504	Y
F009676	Metagenome / Metatranscriptome	314	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209641_100716872	F003152	AGTAGG	MGITEPIHESVHRDVAEFDHWIYGVVPGTGYTTKAFSRGLDAGLYDPYLRGHYTPIRAGAAQTMEGPVDLRMIHPIRTGREILLSRITRGPPDEAGRPTFTNHTVVAATELLRAGRMTLGTVFRAMNEFEQQAADAHGEIGLLKVPILPQEEGPYPFGHGIHKHVTFPALETLATRVMTDPGSRTLLLSRNTTPDARNTTMNLVFELLAWGCGLPLLTAISDAPRSSALNFFNLVVAPRGVRADSSWAILESALAESVLPRVLDRDEVYQVISSAYRHAKDARAPR
Ga0209641_100716873	F009676	GGGGG	MPCALLGDRASGKTTFLGLLYSAQVKYGTGVQDDFRFHAPMASLNVMSAVYEGMKDGRFPSATLKEEITEISFIFGYLRRIVGKLPHYIRQQNWARPFSTLRFSAYDVSGEDIEEFIETGIASRPLIQQLLKSVVVVVLVDCSKMTTDIDTPVYKKMLRYDSTVAKLLVSFQTYKKQEYERLKDSGVHPEPPIIYPAFVLAKFDTLRDDVLARLGLHRGFPEGKRERREYAEALLRVFVPQTLSQIRGGKVGGVSMDKSEYFLSWVRTETQEGMDPVGHSRIVRTGFRPEGGGEPDFAYDEYVHFIEHFRDIAHKIPDEVLEAERFQAQALIRSA

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