Scaffold Ga0207656_10040250

Overview

Basic Information

• Taxon OID: 3300025321
• Scaffold ID: Ga0207656_10040250
• Source Dataset Name: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1981
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: USA: Michigan, Kellogg Biological Station
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016445	Metagenome	247	Y
F046443	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207656_100402502	F016445	N/A	MSLMTKKTRIDAKRVAEIIGCSRKTVLNGGAGTAQLTRIRNGSTQVRFILEEVLAFAEKQERDAQRRLPKVHSTMTS
Ga0207656_100402503	F046443	GAG	MKRIGKQFGSTSAVRREETVVKNFHQYVGPGGQILHGYVRRYKNVRLRKKGFTSKSEAERHLRQAMNDMDAEERGEIRCKPTTAQEALNIYRRNQEVRARDKGYQYAHNVRSNCKIIQQFVDHFGPNRLIRECTETDLREFYQILCFRPTLNKNSAGVFISRIQGMLKAAQKAKPDLINWLRPALKVNRTPEFEHRVVELTEYATLVHTLLNPPLAPSRRSE