Scaffold Ga0209171_10000003

Overview

Basic Information

• Taxon OID: 3300025320
• Scaffold ID: Ga0209171_10000003
• Source Dataset Name: Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1232104
• Total Scaffold Genes: 1110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 787 (70.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: Banff
• Coordinates
  • Lat. (^o): 51.1699
  • Long. (^o): -116.1578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002692	Metagenome / Metatranscriptome	536	Y
F008829	Metagenome / Metatranscriptome	327	Y
F101685	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209171_10000003506	F101685	GGAG	MPTFQFSEWLILLIGTCALLFCLIPVAARGMHGLRPLAWAYALIMFCNGLAHILFSILGHTVAAVTFPRPAPGFYSSPFLLAASVWLMFRLRRTARVDFQLPSGN
Ga0209171_10000003625	F008829	GGA	MRKRIVGLCSISLASLLMASSAFAQSQQIQHRRRPAVIADAGSSAAPQTQPNYEFFSILNGLPMGLELHHDTQVGTGRAIDVYMFPIELQVMNSDGNLEPVGLIFDNFYTAKAMDPITAPNPNNARDCKIWNTMVLFALNNRNPKSRTWPYIEFTVAEGARVIQTNEDGPVWWSDDVECWGSRDRFSPF
Ga0209171_10000003965	F002692	GAG	MSRLAMSLIAYLVLGVLAFATLSDSRIRLVTLLILAMFAFKSWMRRKDVMHPDGESKSE