Scaffold Ga0209697_10168135

Overview

Basic Information

• Taxon OID: 3300025316
• Scaffold ID: Ga0209697_10168135
• Source Dataset Name: Freshwater lake bacterial and archeal communities from Alinen Mustajarvi, Finland, to study Microbial Dark Matter (Phase II) - Alinen Mustajarvi 5m metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Finland: Lake Alinen Mustajarvi
• Coordinates
  • Lat. (^o): 61.5637
  • Long. (^o): 22.044
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038792	Metagenome	165	N
F057853	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209697_101681352	F038792	AGGA	MNTPSRKQFIELITHFKLATEATKEALASEYEQVTRQDAEGKRPITPLLDFCMQRAGTRERAEAIFNHVLKNSRISYWPNPEVAPHLRDNQEIKDVCSKHFIVPVKATEHLLVLCGCNPHDSEGPGAIWQRLAGSKPPFPVVALSEPERIRKALMHFA
Ga0209697_101681353	F057853	N/A	ALLLAAAAACAVATGALQHETRRIRGLVQSRAKLDLELIQYNRHFLSTNSSVESVLSAYQIPCRTLTNHPFQLELDYEAAKKLERVGLLVSAAEFQNGRLTVTLKDYPEAK