Scaffold Ga0207697_10004620

Overview

Basic Information

• Taxon OID: 3300025315
• Scaffold ID: Ga0207697_10004620
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6543
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006315	Metagenome	376	Y
F073614	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207697_100046203	F073614	AGAAG	MRCRTATVKHAGSTEEQCAGADRADSPDTSSYLFEPSNYFNGYLIFLDGGATGYEQGVYLAPHLSKRLMRCDSQSTVRHNCRARRGGYDFDCIDGKSARILSAEHFGSPSKDLKGPDEIEDLSSRPRDEHDPARSGLTWHTSVV
Ga0207697_100046206	F006315	AGCAGG	MMRRSQTSGIAGNCSCCLVPALILLAIIVAAVIGVAVVWQSAVPSVFRWDYGDHHHYNAYRDGYEQGNKLGADYARRGDREPTGQDLDALARREADRMHVRRNRGHWIEGFRNGFTRGFEEFNDQASNQPVSWPRLAARANFPLKFA