NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209323_10005498

Scaffold Ga0209323_10005498


Overview

Basic Information
Taxon OID3300025314 Open in IMG/M
Scaffold IDGa0209323_10005498 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado, USA - sediment 19ft 2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8472
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → Oscillatoria nigro-viridis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.53Long. (o)-107.78Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0209323_100054986F012744GGAGMSHIDDCPVRRSQFLTRGSLFQNPAAKVYVFDHIRHGTALEILSRASAACRFESPHTAVSEYQWREYFGLPVMSLSAAANYYGLNISEIEHHIRKKNTYAGGLFESGMLVLREAALESARDMGHTAEIQQGSVLLPPRAVLHLCLYLRPVPAVAATVNAFWDYVLAEKLHESTPADWHYTSSQHVEIECSRIEEQRLSECLTEAKERKLYPYIQHFGRQTCFEAWARLFTYEGEFPPARGSFYVERQDWFDRVSHLSLWR

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