Scaffold Ga0209172_10000870

Overview

Basic Information

• Taxon OID: 3300025310
• Scaffold ID: Ga0209172_10000870
• Source Dataset Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75118
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (66.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 60.1987
  • Long. (^o): -125.5127

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007214	Metagenome / Metatranscriptome	355	Y
F013226	Metagenome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209172_1000087030	F013226	N/A	VRRRRALALLAAGVASALGRPAAAHITPPVVLVSDRDAVVALLAGARRFFVREVRLTGPERDAIRARSGWTPEEDLHRFYIGRDAEGRLVAAVIFLTEFTIHGPVRVAAALGPDGRVRGAMVVELTEETYGWVKPLIDRDFTRRYVGLAAAGPLPEPPAAAESMGRFYGQIVGALVRRAALLLEEGVLKRGDAA
Ga0209172_1000087031	F007214	AGGAGG	MHGILLTRLPVSAKVFCTLYLVGIGCGALAAFAQAATAVGLSPADVRASLAPESPMTHIGHGERSAEREISLGEVSGAAKVWIRTPLLVQTSHTHLFGQTLIAGLLGLIFLFASLREGPKTVILALPFAGTLLDIGGMWLTRFVSPSLAFLVIAGGTLFAAGYVLIAAISLRDLWLRAEARS