Scaffold Ga0209172_10000114

Overview

Basic Information

• Taxon OID: 3300025310
• Scaffold ID: Ga0209172_10000114
• Source Dataset Name: Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 240663
• Total Scaffold Genes: 246
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 215 (87.40%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 60.1987
  • Long. (^o): -125.5127

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000587	Metagenome / Metatranscriptome	1007	Y
F005457	Metagenome / Metatranscriptome	400	Y
F019744	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209172_1000011416	F019744	GAGG	MSATHPPDGFWSDTYNGHNIAILNHGGGWLVYIDHVLQPRLLFDSADAAVRWLQRKVDRSGARTRELVRSL
Ga0209172_10000114197	F005457	N/A	MSAELSYKTHILIGVRANGVMAVIADWPHLPSLAEVHEQIDGARGDYVAFALCTPTSIVPAGGDTEAGAGGRTPGSRRRA
Ga0209172_1000011440	F000587	GGAG	MKTIVSALIALSVLAGIAAPVAAADAKTFYEQMERSRY
Ga0209172_1000011442	F000587	AGGAG	MKTIVSALIALSVLAGIAAPVAAADAKTFFEQQERARY
Ga0209172_1000011443	F000587	AGGAG	MKSIISALIALSVLAGIAAPVAAADAKTFFEQQERARY