Scaffold Ga0208566_1006649

Overview

Basic Information

• Taxon OID: 3300025307
• Scaffold ID: Ga0208566_1006649
• Source Dataset Name: Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5245
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0621
  • Long. (^o): -124.7214
  • Depth (m): 150

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000980	Metagenome / Metatranscriptome	814	Y
F002935	Metagenome	519	Y
F043940	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208566_10066491	F043940	N/A	HFGVTTNKGNTMKNRFRVEIYDANKSNDVTIYSEQGVDKEYLTELAFSNRRNFLGDVRAYVYDTLKKTKTTALYLPSEVINFNRKNKLTRDELGL
Ga0208566_10066494	F002935	N/A	MKGYSGNVLDGKKLAKIANGIYNLQYSSEFSECTVDNLLLIELEEKNVFGDPKYAVLCSEGVGWEQDTYGCLEIPTNIGQMGLWNGRVFISVDTVKACQTIFKEEVSDYIRVFGDRLDSNCSLWQSKMSVAPATIAQ
Ga0208566_10066495	F000980	N/A	MTKYQKYTWVCTSDCDALIEYTFKDGYGWPNGVMDLTCRCGTNCTLLSVEDATIPYTDSPLPTKEEKMETTETTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVTTLLSKINTVKDIITEAYEDSDDKETLRAIAEALDIELVREVQFTASVEVSGTYSFNILESDYDFDLESEVTDALYADSNNGNIQIDDTEVCNVRES