NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208684_1169582

Scaffold Ga0208684_1169582


Overview

Basic Information
Taxon OID3300025305 Open in IMG/M
Scaffold IDGa0208684_1169582 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)40.24Long. (o)2.3Alt. (m)Depth (m)1876
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000126Metagenome / Metatranscriptome2021Y
F091885Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208684_11695821F091885N/AMNDITGIVVQNILQEKLNKYQVYYNSSYQYGDYDMSDYYAARIKELKIKLSKLIXEISV
Ga0208684_11695822F000126N/AMRDFSITRKKGEMYNAQVTDSYGNKYQNYFEHAHEANDWIYYIWSKEEWFNSANSQELLANAIENCKRIDSKLNVREIXVKNVKQQETQ

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