NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208684_1132632

Scaffold Ga0208684_1132632


Overview

Basic Information
Taxon OID3300025305 Open in IMG/M
Scaffold IDGa0208684_1132632 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)596
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)40.24Long. (o)2.3Alt. (m)Depth (m)1876
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y

Sequences

Protein IDFamilyRBSSequence
Ga0208684_11326321F003091AGGAGMTMLPRKPITKPGEGKQRQKYISEERYLEERYQISLGLKGPKRLEDESFEDFHVRRKAENGLLKEYLRGVWVKKED
Ga0208684_11326322F012582N/AMIQWAEENKIRTKRNGDYEIPQRNGVDWKSDFKFVTKLDSMLADGLDVKLKKKEMEMCNQLYKYYGSVYVKI

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