NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208450_1107024

Scaffold Ga0208450_1107024


Overview

Basic Information
Taxon OID3300025301 Open in IMG/M
Scaffold IDGa0208450_1107024 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)605
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.02Long. (o)8.37Alt. (m)Depth (m)2641
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024325Metagenome / Metatranscriptome206Y
F074966Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0208450_11070241F074966N/AINPAGVINKWTGIGIAGKIYSLVGKQMGLPEQATIGKIGTKLIYGGAVGGFFDPPSAQGRVSTYAVTPNVMVQNRATTQRRHAQFRRNLNYVPPDSFDYSTGSAFR
Ga0208450_11070242F024325GGAGMSGSWDIATATSIGTGTAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLEIDSFSVDLLPKRIIVPPIQSGLGTTITQVNPLLE

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