Scaffold Ga0208316_1052021

Overview

Basic Information

• Taxon OID: 3300025296
• Scaffold ID: Ga0208316_1052021
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 848
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064626	Metagenome / Metatranscriptome	128	N
F088717	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208316_10520212	F064626	GGA	MKELRKVTEKIKKVLIEAERNGEEFPWIVDQLSLIKMYDVGLPITMVLGLIDEFVEDVEERKRIKALEGFDEEHVQKVYDRVNVKWNDRNIN
Ga0208316_10520213	F088717	AGG	MERQEHQLTKRIVDLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSKLLELLSMGFRKTVENFKAGKATTVQG