Scaffold Ga0208316_1052017

Overview

Basic Information

• Taxon OID: 3300025296
• Scaffold ID: Ga0208316_1052017
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 848
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027809	Metagenome	193	N
F035722	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208316_10520171	F035722	AGG	MTLGPSKSVSRAKDGKIYGWSGSYGLTSSAVTLLDYTNPAAFYLTRVTLGIDWSSISAGEVLSYTINVDNQAL
Ga0208316_10520173	F027809	N/A	LLGSNMSEQNLTLAGSCGDVADAGGTAQFNMIPTNFSVAGVNNIDLQVAFQFTSGTPTASSLSVTLYFE