Scaffold Ga0208316_1046408

Overview

Basic Information

• Taxon OID: 3300025296
• Scaffold ID: Ga0208316_1046408
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 922
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.48
  • Long. (^o): 10.16
  • Depth (m): 2304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000730	Metagenome / Metatranscriptome	917	Y
F003617	Metagenome / Metatranscriptome	477	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208316_10464081	F000730	GAG	LVSELIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLISNAPRILHEIDKQIAEQKAQGVSDEQMKGLFQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0208316_10464082	F003617	N/A	EGNNTVFNQTYTLDPDMTAIIYKISLNFCAVLTVSAYTSGTYNLGALHIKITERSTNDSLLYENTFTSNAGDRTSTGTDMHWFTQDIVETIKVRKGNPIDIQLDLITTAGSGTRQEGYAPVAPLLKTAVMKQFYESGISLHLHPDLSHADGVFKYSQQRVSLLGQ