Scaffold Ga0208934_1016591

Overview

Basic Information

• Taxon OID: 3300025293
• Scaffold ID: Ga0208934_1016591
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1540
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 4.36
  • Depth (m): 1304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025388	Metagenome / Metatranscriptome	202	N
F042282	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208934_10165912	F025388	GAG	MTNLQILQIALRRVGLNTGSSTFKDSARDYLNLVTQDIASREKWNWLFKSSTFNTTNGTRTYSLASDVVAPLSFRNTTEDHVILIMSTQDVDAADPDASVNGDPRWAAIDGVDSSGNIEVTLYPEPDSTDTIAYRYYSSIPTFTVSNDNDSITPYVAAVCQPALIHGISALYKQEKGDDQGALSDKQEMERVIAIAGRQNFNVQGNRTYRMRRADDHISGKFSFQPTEGSIG
Ga0208934_10165914	F042282	N/A	YCYTFLQRKQKTMAKRMAPQKQQEHTLPDEIAEVTSTTPVEEPTASVTPDQIADLILKGSDETKNAIRKALDLDKTHTRQRKSPITNSQVRNHVRAVGEVTHEPGFVPEPPSRIADRGEEAVRIWQDRWLDNNGDNLSEYDLDQLAATAHQ