Scaffold Ga0207673_1000440

Overview

Basic Information

• Taxon OID: 3300025290
• Scaffold ID: Ga0207673_1000440
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4303
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049315	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207673_10004404	F049315	N/A	MHSRAAAAAIAFNRTRSDSMKTNLLLTNEAETTRLMLKDVAFAELAMRDSGAHAGCNCDRWGHPCPGCINRVVPTAGEHRSAPVKQ