Scaffold Ga0210044_10119327

Overview

Basic Information

• Taxon OID: 3300025288
• Scaffold ID: Ga0210044_10119327
• Source Dataset Name: Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 3 um filter (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1730
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 38.9383
  • Long. (^o): -110.1342

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001911	Metagenome / Metatranscriptome	618	Y
F044906	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210044_101193272	F044906	N/A	MNSDNKKEYTTIQTKRNIANKLKKMLRVGVTYDDIITDLIDYYHATK
Ga0210044_101193274	F001911	N/A	MMKRHIDFENFKREYKKDFDIPVLSTKEKDIYMYLFLLLRRKIIKGIYPEVYNDEIIYTKSDVKSLISKEIILFKSNRRGWMITMNPTYLTKNVECSWCGAKFNEKIYFRRNSITCPGCGLRMHNSTTASTTSEKLDNHSTAEKAVMNVPRGYVISDNSGNIKVTDIVLAPTAMERLIQIANQEVIPFKIGKADKLNALSTLKRMENKKKEANALILQDNILANFSPICINFLKKYFFIQNHTLFSARMYINLKLSEISNDPQFIANASLKCNTLTEVRNACELLYENAIIRSVTIADE